[phenixbb] N-linked glycans in phenix.refine
Ralf W. Grosse-Kunstleve
rwgk at cci.lbl.gov
Wed Sep 30 08:35:47 PDT 2009
> > Thanks so much for the update. You were right.
> > Now I have another problem, maybe you know. I am
> > using a NAG without the O1 and the program is trying to delete and stop
> > RuntimeError: delete_atom_in_place: unknown atom_id: O1
It is trying to delete the O1 from the cif definitions, probably
because of ...
> > data_link: NAG-ASN
> > mod_id_1: DEL-O1
> > mod_id_2: DEL-HD22
... the associated "DEL-O1" modification. If your NAG cif file doesn't
have the O1 it is probably easiest to copy and rename the link.
You can find the link in the file shown via
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