[phenixbb] N-linked glycans in phenix.refine
Jose Casasnovas
jcasasnovas at cnb.csic.es
Tue Sep 29 10:44:23 PDT 2009
Dear Phenix users.
I am trying to refine N-linked glycans in phenix. The Asn-NAG link
appears to be recognize by the program, but the NAG-NAG link is not.
I guess the cif_link must be missing.
Monomer Library directory:
"/home/soft/phenix/phenix-1.4-3/ext_ref_files/mon_lib"
Total number of atoms: 8947
apply_cif_link:
data_link: NAG-ASN
mod_id_1: DEL-O1
mod_id_2: DEL-HD22
residue_selection_1: chain N and resname NAG and resid 5161
residue_selection_2: chain E and resname ASN and resid 516
apply_cif_link:
data_link: NAG-NAG-B-D
Sorry: Missing CIF link: data_link_NAG-NAG-B-D
Please check for spelling errors or specify the file name
with the link as an additional argument.
How can I get the required cif_link file and where to place it??
Any suggestion.
Thanks.
Jose
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