[phenixbb] Phenix crashes

Randy Read rjr27 at cam.ac.uk
Thu Sep 10 09:44:09 PDT 2009


Did you cut and paste the command or retype it?  If that's the exact  
command, I don't know what would be wrong with the bit  
"ensemble_1.coords=a1.pdb", but "ensemble_1_copies_to_find" should be  
"ensemble_1.copies_to_find" and "componenet" should be "component" and  
"_mass" should be ".mass".  So I wonder if the parser got confused by  
the other syntax errors?

Regards,

Randy Read

On 10 Sep 2009, at 17:28, r n wrote:

> Hi all
>
> I am trying to use phenix.automr to search for two component.
>
> Tried command line...
>
> phenix.automr data=out.sca ensemble_1.coords=a1.pdb   \
> ensemble_1.RMS=0.65 ensemble_1_copies_to_find=5   
> componenet_1_mass=25000   \
> component_1.component_copies=5  ensemble_2.coords=a2.pdb   \
> ensemble_2.RMS=0.60 ensemble_2.copies_to_find=5   
> componenet_2_mass=20000   \
> component_2.component_copies=5
>
> Following errors
>
> phenix-installer-1.4-147/phenix-1.4-147/phenix/phenix/command_line/ 
> automr.py", line 483, in <module>
>  run_automr=run_automr(args=sys.argv[1:])
> phenix-installer-1.4-147/phenix-1.4-147/phenix/phenix/autosol/ 
> wizard_command_line.py", line 1237, in Sorry
>     raise AssertionError,e
> AssertionError: Sorry, unknown file or keyword:  
> ensemble_1.coords=a1.pdb
>
> Not sure , What is wrong in my command?
>
> Also try to use the Gui, but in automr gui only seen option for data  
> file , not for model? May I am
> missing something?
>
> Thanks
>
>
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb

------
Randy J. Read
Department of Haematology, University of Cambridge
Cambridge Institute for Medical Research      Tel: + 44 1223 336500
Wellcome Trust/MRC Building                   Fax: + 44 1223 336827
Hills Road                                    E-mail: rjr27 at cam.ac.uk
Cambridge CB2 0XY, U.K.                       www- 
structmed.cimr.cam.ac.uk

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