[phenixbb] low resolution map
r n
ramme29 at yahoo.com
Wed Sep 2 15:11:01 PDT 2009
Dear Tom
thanks.
________________________________
From: Tom Terwilliger <terwilliger at lanl.gov>
To: PHENIX user mailing list <phenixbb at phenix-online.org>
Sent: Wednesday, September 2, 2009 9:20:55 AM
Subject: Re: [phenixbb] low resolution map
Hi Venkat,
Yes, you can use autobuild to create a map including model and experimental phase information:
phenix.autobuild data=sad_phase_info.mtz model=partial_mr_solution.pdb \
seq_file=seq.dat maps_only=true
This will refine the partial model, use it along with the sad phases in density modification, and produce coefficients for a new map for you:
--- Density-modified map coefficients FP PHIM FOM ---
hklout_denmod: AutoBuild_run_3_/cycle_best_2.mtz
All the best,
Tom T
On Sep 2, 2009, at 8:12 AM, r n wrote:
Hi
>
>I would like to know for low resolution data with poor phase information (SAD and partial MR), Is there possibility to
>in Phenix to improve the phase and map using the partial model at low resolution (3.5 Ang), similar to TNT/BUSTER.
>
>Thanks
>venkat
>
>
>
>
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
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