[phenixbb] error TLS refinement
Pavel Afonine
PAfonine at lbl.gov
Tue Sep 1 07:58:46 PDT 2009
Hi Marjolein,
I guess the problem is in the TLS selection - the older versions were
not very good in saying this clearly... but I'm not sure.
- can you try the latest PHENIX from the nightly build:
http://www.phenix-online.org/download/nightly_builds.cgi
or better
- can you send me the input PDB and parameters file (and .log file too),
so hopefully I can quickly find out what's wrong?
Thanks!
Pavel.
On 9/1/09 2:02 AM, Marjolein Thunnissen wrote:
> I'm trying to finish refining a structure that has been almost refined completely about a year ago with an older version of Phenix.refine. When I start TLS refinement I get the following error message:
>
>
>
> RuntimeError : mean_weighted() argument is an empty array
> Traceback:
> Traceback (most recent call last):
> File "/usr/local/phenix-1.4-3/phenix/wxGUI2/Refine.py", line 259, in OnExcept
> raise event.data
> RuntimeError: mean_weighted() argument is an empty array
>
> I do not get this error when refining without TLS, only when I switch it on. The program advises me to post the error here so...
>
> Thanks
>
> Marjolein
>
> ________________________________________________________________________
>
> Marjolein Thunnissen Phone +46-(0)46-22 24584
> Associate Professor Fax +46-(0)46-22 24692
> Dept of Molecular Biophysics, Lund University http://www.mbfys.lu.se
> PO-Box 124 S-221 00 Lund, Sweden
>
> Scientific coordinator I911 (Max-lab): MAD and fixed-wavelength stations
> for macromolecular crystallography
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