[phenixbb] Converting .mtz to xplor or having phenix output to xplor file
Pavel Afonine
PAfonine at lbl.gov
Tue Oct 27 19:25:29 PDT 2009
Hi Sam,
two ways:
- ask phenix.refine to output X-plor formatted map. For example, to run
phenix.refine just to compute the map:
phenix.refine model.pdb data.mtz main.number_of_mac=1 strategy=none
write_maps=true
- use "Create maps" option from main PHENIX GUI that will alow you to
compute any map.
Pavel.
On 10/27/09 2:28 PM, Sam Stampfer wrote:
> Hi,
>
> This isn't exactly phenix-related but someone might know an easy
> solution. I'm trying to open an electron density map in pymol. It
> won't open .mtz files and the .xplor files I generated from ccp4i
> don't seem to work either. I need to have my density as a .xplor file
> in order for pymol to open it (I think). How would I generate a
> .xplor file from .mtz? Or, alternately, how can I set phenix to
> output a .xplor file? I've had it output to a cns file instead of
> .mtz but that didn't help me get it in .xplor format.
>
> Thanks!
> -Sam
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