[phenixbb] log file
Young-Jin Cho
yjcho at brandeis.edu
Tue Oct 6 12:49:59 PDT 2009
Hi,
While I refining I found the following is included in the .log file. I am using different pdb files. When I looked up residue number 175, it looked ok to me. Do you guys have any idea how to deal with this?
Conformer: "C"
Number of residues, atoms: 175, 1321
Classifications: {'peptide': 175}
Link IDs: {'PTRANS': 14, 'TRANS': 159, 'PCIS': 1}
Chain breaks: 24
Unresolved chain link angles: 14
Unresolved chain link dihedrals: 28
Unresolved chain link planarities: 14
Unresolved non-hydrogen bonds: 50
Unresolved non-hydrogen angles: 60
Unresolved non-hydrogen dihedrals: 26
Unresolved non-hydrogen chiralities: 8
Planarities with less than four sites: {'GLU:plan': 1, 'ARG:plan': 1}
Unresolved non-hydrogen planarities: 9
bond proxies already assigned to first conformer: 1313
Thanks in advance,
Young-Jin
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