[phenixbb] phasing power value in Autosol/Autobuild
Tom Terwilliger
terwilliger at lanl.gov
Thu Nov 19 08:04:59 PST 2009
Hi Vennila,
If you are running MAD or MIR, then these values can be found in your
"solve_xx.prt" where xx is the solution number:
For MAD:
RMS ANOMALOUS FH/E [f" PART OF FH / RMS ANO ERROR]:
LAMBDA: 1 0.5 0.9 1.0 0.7 0.6 0.5 0.3
0.2 0.1
LAMBDA: 2 0.3 0.6 0.7 0.5 0.3 0.3 0.2
0.1 0.1
LAMBDA: 3 0.7 1.1 1.1 0.8 0.7 0.6 0.5
0.4 0.3
RMS DISPERSIVE FH/E [Delta-f-prime PART OF FH / RMS DISPERSIVE
ERROR]:
L1 VS L2: 1.0 1.5 1.6 1.1 1.1 0.9 0.6
0.4 0.3
L1 VS L3: 0.9 1.3 1.5 1.1 1.0 0.8 0.5
0.4 0.3
L2 VS L3: 0.2 0.4 0.4 0.3 0.2 0.2 0.1
0.1 0.0
or for MIR:
CENTRIC REFLNS: 524. 63. 61. 66. 71. 71. 70.
67. 55.
RMS HA F: 83.9 119.2 126.2 90.3 74.1 65.9 58.7
58.2 45.5
RMS RESIDUAL: 43.4 58.2 37.6 45.3 41.6 41.8 44.3
36.1 37.8
RMS(FH)/RMS(E): 1.93 2.05 3.36 1.99 1.78 1.58 1.32
1.61 1.20
CENTRIC R FACT: 0.43 0.35 0.27 0.47 0.51 0.50 0.56
0.49 0.57
ACENTRIC REFLN: 5915. 236. 477. 617. 753. 864. 956.
1012. 1000.
RMS DERIV FPH: 504.0 612.5 452.3 610.3 629.2 561.4 479.8
411.7 352.7
RMS SIGMA FPH: 12.1 5.8 6.6 10.5 8.9 10.5 12.0
14.2 16.6
RMS SIGMA FP: 12.3 6.0 7.4 8.4 9.6 10.6 12.5
14.6 17.0
RMS HA F: 74.1 132.7 109.3 94.3 80.1 70.2 58.9
51.2 45.3
RMS RESIDUAL: 31.6 28.7 30.7 27.4 28.9 29.9 33.2
31.2 37.0
RMS(FH)/RMS(E): 2.34 4.63 3.55 3.44 2.77 2.35 1.77
1.64 1.22
If you are running SAD data then phaser_xx.log currently does not
list a phasing power, only figures of merit and log-likelihood gain.
In AutoBuild there is no phasing power calculation done.
All the best
Tom T
On Nov 18, 2009, at 10:15 PM, vennila Natesan wrote:
> Dear all...
>
> I need toknow the phasing power value for my
> solved structure. Where can i find it out in the output
> files of autosol and autobuild? I am using phenix1.14.4b
> and also i need to know the weighted mean phase errors
> vs resolution.
>
> Thanking you.
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
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