[phenixbb] phasing power value in Autosol/Autobuild

Tom Terwilliger terwilliger at lanl.gov
Thu Nov 19 08:04:59 PST 2009


Hi Vennila,

If you are running MAD or MIR, then these values can be found in your  
"solve_xx.prt" where xx is the solution number:

For MAD:

RMS ANOMALOUS FH/E  [f" PART OF FH / RMS ANO ERROR]:

  LAMBDA:  1         0.5    0.9    1.0    0.7    0.6    0.5    0.3     
0.2    0.1
  LAMBDA:  2         0.3    0.6    0.7    0.5    0.3    0.3    0.2     
0.1    0.1
  LAMBDA:  3         0.7    1.1    1.1    0.8    0.7    0.6    0.5     
0.4    0.3

  RMS DISPERSIVE FH/E  [Delta-f-prime PART OF FH / RMS DISPERSIVE  
ERROR]:

  L1 VS L2:          1.0    1.5    1.6    1.1    1.1    0.9    0.6     
0.4    0.3
  L1 VS L3:          0.9    1.3    1.5    1.1    1.0    0.8    0.5     
0.4    0.3
  L2 VS L3:          0.2    0.4    0.4    0.3    0.2    0.2    0.1     
0.1    0.0


or for MIR:

CENTRIC REFLNS:   524.    63.    61.    66.    71.    71.    70.     
67.    55.
  RMS HA F:         83.9  119.2  126.2   90.3   74.1   65.9   58.7    
58.2   45.5
  RMS RESIDUAL:     43.4   58.2   37.6   45.3   41.6   41.8   44.3    
36.1   37.8
  RMS(FH)/RMS(E):   1.93   2.05   3.36   1.99   1.78   1.58   1.32    
1.61   1.20
  CENTRIC R FACT:   0.43   0.35   0.27   0.47   0.51   0.50   0.56    
0.49   0.57

  ACENTRIC REFLN:  5915.   236.   477.   617.   753.   864.   956.   
1012.  1000.
  RMS DERIV FPH:   504.0  612.5  452.3  610.3  629.2  561.4  479.8   
411.7  352.7
  RMS SIGMA FPH:    12.1    5.8    6.6   10.5    8.9   10.5   12.0    
14.2   16.6
  RMS SIGMA FP:     12.3    6.0    7.4    8.4    9.6   10.6   12.5    
14.6   17.0
  RMS HA F:         74.1  132.7  109.3   94.3   80.1   70.2   58.9    
51.2   45.3
  RMS RESIDUAL:     31.6   28.7   30.7   27.4   28.9   29.9   33.2    
31.2   37.0
  RMS(FH)/RMS(E):   2.34   4.63   3.55   3.44   2.77   2.35   1.77    
1.64   1.22

   If you are running SAD data then phaser_xx.log currently does not  
list a phasing power, only figures of merit and log-likelihood gain.

In AutoBuild there is no phasing power calculation done.

All the best
Tom T

On Nov 18, 2009, at 10:15 PM, vennila Natesan wrote:

> Dear all...
>
> I need toknow the phasing power value for my
> solved structure. Where can i find it out in the output
> files of autosol and autobuild? I am using phenix1.14.4b
> and also i need to know the weighted mean phase errors
> vs resolution.
>
> Thanking you.
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb


Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss




-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20091119/ade6af60/attachment-0003.htm>


More information about the phenixbb mailing list