[phenixbb] C-ter amidation of peptide
Nate Nicely
neeltgen at yahoo.com
Mon Nov 9 13:10:16 PST 2009
Dear all,
How best to handle a C-terminally amidated peptide in phenix? I defined the atom as 'N' and the resname as 'NH2' following a structure I found that also bears a C-terminally amidated peptide. However phenix.refine seems not to be making the linkage between the amide and the preceding residue. Putting the structure into phenix.elbow returns, "No unknown residues."
Thanks,
Nate N.
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