[phenixbb] C-ter amidation of peptide

Nate Nicely neeltgen at yahoo.com
Mon Nov 9 13:10:16 PST 2009


Dear all,

How best to handle a C-terminally amidated peptide in phenix?  I defined the atom as 'N' and the resname as 'NH2' following a structure I found that also bears a C-terminally amidated peptide.  However phenix.refine seems not to be making the linkage between the amide and the preceding residue.  Putting the structure into phenix.elbow returns, "No unknown residues."

Thanks,

Nate N.


      



More information about the phenixbb mailing list