[phenixbb] phenixbb Digest, Vol 48, Issue 2

Xuewu Zhang xuewu.zhang at gmail.com
Tue Nov 3 12:27:51 PST 2009


You are right. It started in the 2nd macro cycle. I should have been a
little more patient. Sorry about it.
Thanks,
Xuewu

On Tue, Nov 3, 2009 at 2:00 PM, <phenixbb-request at phenix-online.org> wrote:

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> Today's Topics:
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>   1. Re: optimization of wxc and wxu (Xuewu Zhang)
>   2. Re: optimization of wxc and wxu (Pavel Afonine)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Tue, 3 Nov 2009 08:28:58 -0600
> From: Xuewu Zhang <xuewu.zhang at gmail.com>
> Subject: Re: [phenixbb] optimization of wxc and wxu
> To: phenixbb at phenix-online.org
> Message-ID:
>        <926abad50911030628h31d09c53m59c2c84f1d024596 at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi phenix developers/gurus,
>
> I am using the latest night build of phenix on OS X snow leopard. I found
> that phenix ignores these lines in my custom refinement file:
>
> refinement.target_weights.optimize_wxc="True"
> refinement.target_weights.optimize_wxu="True"
>
> Manually setting up the scale factors however works. I am not sure whether
> this is a bug or a platform related issue.
>
> Thanks,
> Xuewu Zhang
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> Message: 2
> Date: Tue, 03 Nov 2009 07:52:31 -0800
> From: Pavel Afonine <PAfonine at lbl.gov>
> Subject: Re: [phenixbb] optimization of wxc and wxu
> To: PHENIX user mailing list <phenixbb at phenix-online.org>
> Message-ID: <4AF051BF.1010703 at lbl.gov>
> Content-Type: text/plain; charset="iso-8859-1"
>
> It's very unlikely that phenix.refine ignores it. These options are very
> old and are used routinely by many users. Therefore questions:
>
> - how you know that they are ignored?
> - could you please send me the log file?
>
> Note, that these weight optimizations start by default after certain
> number of macro-cycles, not immediately. There are several modes and you
> can use any you like. You can ask it to start from the first macro-cycle.
>
> Pavel.
>
>
> On 11/3/09 6:28 AM, Xuewu Zhang wrote:
> > Hi phenix developers/gurus,
> >
> > I am using the latest night build of phenix on OS X snow leopard. I
> > found that phenix ignores these lines in my custom refinement file:
> >
> > refinement.target_weights.optimize_wxc="True"
> > refinement.target_weights.optimize_wxu="True"
> >
> > Manually setting up the scale factors however works. I am not sure
> > whether this is a bug or a platform related issue.
> >
> > Thanks,
> > Xuewu Zhang
> >
> > ------------------------------------------------------------------------
> >
> > _______________________________________________
> > phenixbb mailing list
> > phenixbb at phenix-online.org
> > http://www.phenix-online.org/mailman/listinfo/phenixbb
> >
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> End of phenixbb Digest, Vol 48, Issue 2
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