[phenixbb] New Phaser GUI problems
Nathaniel Echols
NEchols at lbl.gov
Mon Nov 2 10:35:19 PST 2009
On Nov 2, 2009, at 3:38 AM, Felix Frolow wrote:
> I try to use a shiny new GUI for Phaser
> I stuck with the definition of a component mass.
> Line command accept "None" for mass of component, but not GUI. It
> claims that the mass calculated value I supply is not
> integer number, for the sake of argument I have tried 14, 14.0 etc.
> (BTW as a sequence is also supplied, why just not to calculate it?).
Just to clarify for the list, there is a new AutoMR GUI in the current
nightly builds. (Not for Phaser itself - that's on the to-do list.)
It will feed results directly to AutoSol if you are trying to phase
with MR-SAD.
Felix already figured out the answer, but it's a little confusing:
AutoMR (like Phaser) is flexible about how you specify the component
mass, but you can only use one source of information - defining both
the sequence and the mass will result in an error message. More
generally, in the GUI 'None' (which is really the standard Python null
value, not some Phenix-specific keyword) is translated to a blank
string, so if you want to set a parameter to None, just leave the
field blank.
-Nat
-------------------
Nathaniel Echols
Lawrence Berkeley Lab
510-486-5136
NEchols at lbl.gov
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