[phenixbb] creating cif for Zn
mickael blaise
mickael.blaise at gmail.com
Tue May 26 12:50:06 PDT 2009
Hi Raja
I had once this problem in my case ZN was written instead of Zn and the
refinement was stopping ...
mick
2009/5/26 Raja Dey <rdey at usc.edu>
> Dear Friends,
> I have Zn atoms in my pdb file. So, I think I need to
> run elbow to create the cif otherwise refinement stops.
> I did the following and got the error as follows:
>
> phenix.elbow generate_easy_r4.pdb --do-all
>
>
>
> ------------------------------------------------------------------------------
> electronic Ligand Builder & Optimisation Workbench (eLBOW) 1.4 3
> - Nigel W. Moriarty (NWMoriarty at LBL.Gov)
>
> ------------------------------------------------------------------------------
>
> Random number seed: 664322001
> 0:00 Parsing Parsing Parsing Parsing Parsing Parsing Parsing Parsing
> Parsing P
>
> No molecule read
>
> Use --all-residues to view residues if this is a PDB file
>
> Can anyone suggests at this point, what I should do?
> Thanking you in advance...
>
> Raja
>
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--
------------------------------------------
Mickael Blaise PhD
Department of molecular biology
Centre for structural biology
Aarhus university
Gustav wieds vej 10
8000 Aarhus-Denmark
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