[phenixbb] Autobuild error
Tom Terwilliger
terwilliger at lanl.gov
Wed May 20 10:57:56 PDT 2009
Hi Katya,
I'm sorry for the trouble! Can you first check to make sure you have
a recent version of phenix (i.e., in the last few months). There was
an earlier version that sometimes had this problem but I think that it
should not be happening now. If not, can you download a current
nightly build (take one from a few days ago to be safe) and try again?
If that does not do it, then if you could email me a listing of the
autoBuild directories with "ls -lR" and send me the AutoBuild_run_1_/
AutoBuild_run_1_1.log file that would be most helpful.
All the best,
Tom T
Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
On May 20, 2009, at 11:51 AM, Katya Heldwein wrote:
> Hi, I am trying to run Autobuild to generate a very good rebuilt
> model using
>
> phenix.autobuild data=data.mtz model=coords.pdb multiple_models=True \
> include_input_model=True \
> multiple_models_number=1 n_cycle_rebuild_max=5
>
> with some modifications.
>
> When I run it, I get the following error:
>
> ********************************************************************************
> Failed to carry out AutoBuild_multiple_models:
>
> [Errno 2] No such file or directory: 'AutoBuild_run_1_/TEMP0/
> temporary.com'
> ********************************************************************************
>
> How can I troubleshoot this problem?
>
> Katya
>
>
> --
> Ekaterina Heldwein, Ph.D.
> Assistant Professor
> Department of Molecular Biology and Microbiology
> Tufts University 136 Harrison Ave
> Boston, MA 02111
>
> phone: 617-636-0858
> fax: 617-636-0337
> e-mail: katya.heldwein at tufts.edu
>
>
>
>
>
>
> _______________________________________________
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> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
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