[phenixbb] mutate to polyAla

[Pavel Afonine]

I just realized that you could do it even without using truncate_to_polyala:

phenix.pdbtools model.pdb keep="backbone"

or, equivalently:

phenix.pdbtools model.pdb remove="sidechain"

and it works for both: proteins and RNA/DNA.

Pavel.


On 5/13/09 12:43 PM, Francis E Reyes wrote:
> Though the original question was for protein, is there a mutate to  
> poly C for RNA as well? :)
>
> It just came to mind right now.
>
> FR
>
>
>
> On May 13, 2009, at 1:42 PM, Pavel Afonine wrote:
>
>   
>> Hi,
>>
>> the next nightly build of PHENIX will have this option available from
>> phenix.pdbtools.
>>
>> Example:
>>
>> phenix.pdbtools model.pdb truncate_to_polyala=true
>>
>> As always, any feedback will be very appreciated.
>>
>> Pavel.
>>
>>
>> On 5/7/09 7:01 AM, Francis E Reyes wrote:
>>     
>>> Is there an option or a phenix.* utility to mutate a MR model to poly
>>> ALA before the MR is done?
>>>
>>>       
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://www.phenix-online.org/mailman/listinfo/phenixbb
>>     
>
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
>
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>
> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
>   
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20090513/10438fdb/attachment-0003.htm>