[phenixbb] Missing plotting libraries
c.leigh.allen at gmail.com
Mon May 4 09:17:00 PDT 2009
I downloaded the newest nightly build per Nathaniel Echols' instructions. I
was trying to fix the following error:
A Python error was detected. This is almost certainly a bug; please send an
email containing this message to phenixbb at phenix-online.org so we can fix
IndexError : string index out of range
Traceback (most recent call last):
phenix/wxGUI2/Refine.py", line 259, in OnExcept
IndexError: string index out of range
phenix.refine_gui and phenix.refine were working perfectly well and then all
of the sudden between 2 saves, something went wrong. My first PDB
(refine_001-coot-2.pdb) is normal, but then refine_001-coot-3.pdb and onward
are missing ALL of the REMARK cards. It starts with the CRYST card followed
by the coordinates.
Could this be a coot problem? Can I cut and paste the REMARKs from
refine_001-coot-2.pdb into the top of refine_001-coot-5.pdb?
On Mon, May 4, 2009 at 12:06 PM, Ralf W. Grosse-Kunstleve
<rwgk at cci.lbl.gov>wrote:
> Possible quick fix: yum install lapack
> However, we don't really want to depend on a system lapack. I'd like
> to track down why we have that dependency. Could you send me the
> file name of the tar file you downloaded?
> phenixbb mailing list
> phenixbb at phenix-online.org
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