[phenixbb] IndexError
Huiying Li
hli at crystal.bio.uci.edu
Thu Mar 19 13:39:19 PDT 2009
I was running phenix refinement using the following command:
phenix.refine data.mtz model.pdb \
strategy=individual_sites+tls+individual_adp \
my_lib.cif tls.params
the run crashed with the error:
......
......
File "/usr/local/phenix-1.3-final/mmtbx/mmtbx/monomer_library/pdb_interpretation.py",
line 970, in get_lib_link
atom_dicts[angle.atom_3_comp_id].get(angle.atom_id_3, None)]
IndexError: list index out of range
Is the index error refering to some problem in the reflection file (mtz)?
Thanks for any suggestions.
Huiying
_____
Huiying Li, Ph. D
Department of Molecular Biology and Biochemistry
Natural Sciences I, Rm 2443
University of California at Irvine
Irvine, CA 92697, USA
Tel: 949-824-4322(or -1953); Fax: 949-824-3280
email: hli at uci.edu
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