[phenixbb] phenix.refine issue
Ralf W. Grosse-Kunstleve
rwgk at cci.lbl.gov
Mon Jul 27 16:25:46 PDT 2009
> I am having an issue with running a simple phenix.refine that I have
> never encountered before. I get a list of issues and the program quits
> with:
Sorry for the problem. It was fixed Apr 11 2009. Any installer built
after this date should work.
If you want to patch your 1.4-3 installation, edit the file
/usr/local/phenix-1.4-3/iotbx/mtz/__init__.py
and add one line as shown below.
Ralf
Index: __init__.py
===================================================================
--- __init__.py (revision 8913)
+++ __init__.py (revision 8914)
@@ -430,6 +430,7 @@
if (merge_equivalents
and isinstance(column_group.data(), flex.double)
and isinstance(column_group.sigmas(), flex.double)
+ and column_group.sigmas().size() != 0
and flex.min(column_group.sigmas()) > 0):
merged_column_group = column_group.merge_equivalents().array()
if (merged_column_group.indices().size()
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