[phenixbb] Disappearing side chains after autobuilding
katya.heldwein at tufts.edu
Wed Jan 21 13:43:15 PST 2009
I ran phenix.autobuild with default setting (rebuild_in_place), and
noticed that some side chains were gone in the resulting
overall_best.pdb. That is, let's say, I started with Phe as residue 10.
After rebuilding, the Phe10 is still called Phe in the output file, but
the side chain atoms are gone, leaving residue 10 as Ala. This happened
for several side chains, and I am at a loss for why this happened. Is
this some kind of a bug?
Ekaterina Heldwein, Ph.D.
Department of Molecular Biology and Microbiology
Tufts University School of Medicine
136 Harrison Ave
Boston, MA 02111
e-mail: katya.heldwein at tufts.edu
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