[phenixbb] Autosol problem: Failed to carry out Autosol_scale_and_analyze_mad

Zheng Zhou zhengzhouzz at gmail.com
Tue Dec 22 17:03:53 PST 2009


Dear all

I installed phenix nightly builds, dev-256. I have solved structures
using molecular replacement. Phenix.refine runs smoothly. Thanks for
your great work.

When I run some test data using autosol, I met the following error message:

********************************************************************************
Failed to carry out AutoSol_scale_and_analyze_mad:

None of the solve versions worked
See overall log file and also solve log file (in AutoSol_run_1_/LAST.LOG)
********************************************************************************

The LAST.LOG appears to be empty. I also run the phenix.solve command.
Here is the output:

*********************************************************************************************
$ phenix.solve
binary=/usr/local/phenix-dev-254/build/intel-linux-2.6/solve_resolve/exe/solve
SOLVEDIR=/usr/local/phenix-dev-254/solve_resolve/ext_ref_files
SYMOP=/usr/local/phenix-dev-254/solve_resolve/ext_ref_files/symop.lib
SYMINFO=/usr/local/phenix-dev-254/solve_resolve/ext_ref_files/syminfo.lib
CCP4_OPEN=UNKNOWN
SOLVE_RESOLVE_MALLOC_MAX=7.48024e+09

/usr/local/phenix-dev-254/build/intel-linux-2.6/solve_resolve/exe/solve:
error while loading shared libraries:
/usr/local/phenix-dev-254/build/intel-linux-2.6/lib/libimf.so: cannot
restore segment prot after reloc: Permission denied
*****************************************************************************************************

The libimf.so file is there. I run phenix.solve as superuser, but I
still have the same problem.

Thanks for your help.

Best,

Joe



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