[phenixbb] .cif use/restraints

[Bryan W. Lepore]

a ligand is distorting - as if it is ignoring the .cif and i already have 
the angles tighted up in the .def.  what else should i check?

what i did :

generated some elbow output.  the .cif was provided to phenix.refine on 
cmd line.  the .pdb had the H's and CONNECT's removed, but the .cif 
retains them.  the .pdb was incorporated into a single .pdb input file.

-bryan