[phenixbb] Assertion error while adding water
Bishal Kumar Singh
bishalsi at mail.student.oulu.fi
Sat Aug 1 00:13:32 PDT 2009
Hi,
Following error is showing while adding water. Every command-line is
as default except "ordered_solvent = True". I will appreciate your
suggestions.
"0.7 1.17367178905
0.7 1.2044634853
0.7 1.18455476555
0.7 1.21102571346
0.7 1.20890773595
0.7 1.23028004675
0.7 1.2017635385
0.7 1.2151128962
0.7 1.20672093638
0.7 1.17881942233
0.7 1.21258440895
0.7 1.21100112067
0.7 1.22101928156
0.7 1.20955876073
0.7 1.17722437184
0.7 1.19891104532
0.7 1.18433797592
Traceback (most recent call last):
File
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/command_line/refine.py",
line 16, in <module>
command_line.run(command_name="phenix.refine", args=sys.argv[1:])
File
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/refinement/command_line.py",
line 89, in run
call_back_after_monitor_collect=call_back_after_monitor_collect)
File
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/refinement/driver.py", line
1121, in run
call_back_after_monitor_collect = call_back_after_monitor_collect)
File
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/refinement/strategies.py",
line 394, in refinement_machine
log = log)
File
"/wrkhuge/cci_apps/cci_apps_sources/mmtbx/solvent/ordered_solvent.py",
line 159, in __init__
use_kick_map = self.params.use_kick_maps).peaks_mapped()
File
"/wrkhuge/cci_apps/cci_apps_sources/mmtbx/solvent/ordered_solvent.py",
line 334, in find_peaks
log = self.log)
File "/wrkhuge/cci_apps/cci_apps_sources/mmtbx/find_peaks.py", line
93, in __init__
crystal_gridding_tags = fft_map.tags()
File "/wrkhuge/cci_apps/cci_apps_sources/cctbx/maptbx/__init__.py",
line 152, in tags
return crystal_gridding_tags(self)
File "/wrkhuge/cci_apps/cci_apps_sources/cctbx/maptbx/__init__.py",
line 158, in __init__
assert gridding.symmetry_flags() is not None"
regards,
Bishal Singh
More information about the phenixbb
mailing list