[phenixbb] Assertion error while adding water

Bishal Kumar Singh bishalsi at mail.student.oulu.fi
Sat Aug 1 00:13:32 PDT 2009


Hi,
Following error is showing while adding water. Every command-line is  
as default except "ordered_solvent = True". I will appreciate your  
suggestions.
"0.7 1.17367178905
0.7 1.2044634853
0.7 1.18455476555
0.7 1.21102571346
0.7 1.20890773595
0.7 1.23028004675
0.7 1.2017635385
0.7 1.2151128962
0.7 1.20672093638
0.7 1.17881942233
0.7 1.21258440895
0.7 1.21100112067
0.7 1.22101928156
0.7 1.20955876073
0.7 1.17722437184
0.7 1.19891104532
0.7 1.18433797592
Traceback (most recent call last):
   File  
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/command_line/refine.py",  
line 16, in <module>
     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
   File  
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/refinement/command_line.py",  
line 89, in run
     call_back_after_monitor_collect=call_back_after_monitor_collect)
   File  
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/refinement/driver.py", line  
1121, in run
     call_back_after_monitor_collect = call_back_after_monitor_collect)
   File  
"/wrkhuge/cci_apps/cci_apps_sources/phenix/phenix/refinement/strategies.py",  
line 394, in refinement_machine
     log               = log)
   File  
"/wrkhuge/cci_apps/cci_apps_sources/mmtbx/solvent/ordered_solvent.py",  
line 159, in __init__
     use_kick_map = self.params.use_kick_maps).peaks_mapped()
   File  
"/wrkhuge/cci_apps/cci_apps_sources/mmtbx/solvent/ordered_solvent.py",  
line 334, in find_peaks
     log             = self.log)
   File "/wrkhuge/cci_apps/cci_apps_sources/mmtbx/find_peaks.py", line  
93, in __init__
     crystal_gridding_tags = fft_map.tags()
   File "/wrkhuge/cci_apps/cci_apps_sources/cctbx/maptbx/__init__.py",  
line 152, in tags
     return crystal_gridding_tags(self)
   File "/wrkhuge/cci_apps/cci_apps_sources/cctbx/maptbx/__init__.py",  
line 158, in __init__
     assert gridding.symmetry_flags() is not None"

regards,
Bishal Singh





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