[phenixbb] phenix 1.3-rc4 vs. phenix 1.3-final
jzhu at idi.harvard.edu
Thu Sep 18 20:43:19 PDT 2008
Is the option to turn off automatic weighting available in the new
2008_09_13_0905 CCI apps?
On Sep 11, 2008, at 11:58 AM, Paul Adams wrote:
> Hi Jianghai,
> Pavel introduced an automatic modification of the weights between
> these two versions. In general it is an improvement but in some cases
> the final R-factors can be a bit higher than using fixed weights.
> Unfortunately there isn't a way to turn off this autoweighting in 1.3-
> final. Pavel will add this option and we'll release an updated
> installer soon (there are a couple of other bugs we've found
> elsewhere in PHENIX that are being fixed also).
> On Sep 11, 2008, at 7:54 AM, Jianghai Zhu wrote:
>> I have done a couple of refinements using either phenix.refine 1.3-
>> or phenix.refine 1.3-final. And phenix.refine 1.3-rc4 always gave me
>> a lower Rfree, about 1% lower than phenix.refine 1.3-final, which
>> actually is pretty big. What has changed between this two versions?
>> -- Jianghai
>> phenixbb mailing list
>> phenixbb at phenix-online.org
> Paul Adams
> Deputy Division Director, Physical Biosciences Division, Lawrence
> Berkeley Lab
> Adjunct Professor, Department of Bioengineering, U.C. Berkeley
> Vice President for Technology, the Joint BioEnergy Institute
> Head, Berkeley Center for Structural Biology
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> Tel: 510-486-4225, Fax: 510-486-5909
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