[phenixbb] sa_omit-map

[Thomas C. Terwilliger]

Hi Pavel and Vladimir,
After all this discussion...I think there is something wrong with the
composite omit maps in the current version...I will check this out. If you
instead just omit around the atoms in a pdb file with
"omit_box_pdb=target.pdb" that seems fine however.
I'm sorry for the problem.
All the best,
Tom T

> Hi Tom,
>
> don't we need to add "maps_only=True" as well (as Manual suggests in
> section "Just make maps; don't do any building.";
> http://www.phenix-online.org/documentation/autobuild.htm) ?
>
> I'm asking because the original question was specific about it: compute
> map and "nothing extra".
>
> Thanks,
> Pavel.
>
> On 10/13/2008 2:17 PM, Thomas C. Terwilliger wrote:
>> Hi Vladimir,
>> You can do this with:
>>
>> phenix.autobuild data=data.mtz model=coords.pdb
>> composite_omit_type=sa_omit nproc=4
>>
>> All the best,
>> Tom T
>>
>>
>>
>>> After phenix.refine stage I would like to get just the sa_omit map for
>>> the
>>> whole assymetric unit (nothing extra). How can I do it?
>>>  Regards.
>>> Vladimir
>>>
>>>
>>>
>>> _______________________________________________
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org
>>> http://www.phenix-online.org/mailman/listinfo/phenixbb
>>>
>>>
>>
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://www.phenix-online.org/mailman/listinfo/phenixbb
>>
>