[phenixbb] sa_omit-map

Pavel Afonine PAfonine at lbl.gov
Thu Oct 16 12:12:46 PDT 2008


Hi Tom,

don't we need to add "maps_only=True" as well (as Manual suggests in 
section "Just make maps; don't do any building."; 
http://www.phenix-online.org/documentation/autobuild.htm) ?

I'm asking because the original question was specific about it: compute 
map and "nothing extra".

Thanks,
Pavel.

On 10/13/2008 2:17 PM, Thomas C. Terwilliger wrote:
> Hi Vladimir,
> You can do this with:
>
> phenix.autobuild data=data.mtz model=coords.pdb
> composite_omit_type=sa_omit nproc=4
>
> All the best,
> Tom T
>
>
>   
>> After phenix.refine stage I would like to get just the sa_omit map for the
>> whole assymetric unit (nothing extra). How can I do it?
>>  Regards.
>> Vladimir
>>
>>
>>
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>
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