[phenixbb] no shift with rigid body

Pavel Afonine pafonine at lbl.gov
Mon Nov 3 09:30:09 PST 2008

Hi James,

could you send us the data and model so we can optimize our rigid body 
refinement protocol even more to automatically handle cases like yours. 
We promise to keep your data confidential. If you decide to send the 
data, please send it to my address (not to the phenixbb).


On 11/3/2008 6:27 AM, James Whittle wrote:
> Hi-
> I'm trying to do rigid body refinement against 3.5 A SeMet data, using 
> a rigid_body group for each helix in the protein. The log file and the 
> pdb results both report shifts for each of the rigid body groups, yet 
> the coordinates overlay perfectly with the input coordinates.
> Can any one suggest what I might be doing incorrectly?
> --James
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