[phenixbb] ADP high variance
Daniel Frey
freyd at bioc.unizh.ch
Thu Mar 20 03:59:37 PDT 2008
Hello,
I have a good data set to 1.8 A and refined it with the actual version
of phenix, including annealing and isotropic bfactors. Checking the B
factor variance in coot revealed high differences in about 50% of the
residues. Most of them are at the surface, but still there are
residues like phenylalanines and valines within the core where the
bfactors jump from 25 to 50 from one carbon atom to the other.
Changing wu and wxu_scale did not improve the results. A quick check
with refmac improved the results, so i guess I am missing the right
restraints for phenix. Which parameters should be changed to improve
the bfactor variance in phenix?
Thanks for your help
Daniel
Daniel Frey
Department of Biochmistry
University of Zurich
Winterthurerstrass 190
8057 Zurich
Switzerland
freyd at bioc.unizh.ch
Tel: +41446355558
www.biochem.uzh.ch/gruetter
www.structuralbiology.uzh.ch
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