[phenixbb] Fatal Error: Incomplete libtbx environment!

William Scott wgscott at chemistry.ucsc.edu
Tue Jan 1 08:51:53 PST 2008


> Please re-run the libtbx/configure.py command.

I think you just have to invoke it with

python /path/to/libtbx/configure.py


Yong-Fu Li wrote:
>
> Hi,
>
> I just installed Phenix 1.3b, however got this error message when I tried
> to run phenix.
>
> *******************************************
> Fatal Error: Incomplete libtbx environment!
> *******************************************
> Please re-run the libtbx/configure.py command.
>
> My system is: 2.6.23.8-34.fc7 i686
>
> Here is what I did:
> 1) downloaded phenix-installer-1.3b-rc6-intel-linux-2.6.tar
> 2) tar -xvf ...
> 3) In directory: phenix-installer-1.3b/, execute ./install
> 4) moved phenix-1.3b-rc6/ from /usr/local to /usr/local/progs where all of
> my programs dwell
> 5) source phenix_env in: /usr/local/progs/Phenix/phenix-1.3b-rc6
> 6) then run: ./phenix, and got the above message
> 7) as root go to /libtbx, chmod +x configure.py, and ./configure.py (I
> don't know about python, and my Python is 2.5), it hangs there for very
> long (>10 min) with another error:
>
> ./configure.py: line 3: syntax error near unexpected token `('
> ./configure.py: line 3: `def run():'
>
> I checked the bb for help but didn't find any useful info (not finished
> reading all the messages). I wonder whether someone could help!
>
> Thanks and happy new year!
>
> Yongfu
>
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