[phenixbb] geometry in phenix.refine

Ralf W. Grosse-Kunstleve rwgk at cci.lbl.gov
Thu Feb 21 10:46:19 PST 2008

> I also noticed that the geometry output by phenix.refine and
> phenix.pdbtools are different.  What is the reason for that?

The default number of minimization iterations and macro-cycles are
different, which influences the trajectory.
How different are the models?

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