[phenixbb] phenix.refine writing maps error
Francis E Reyes
Francis.Reyes at Colorado.EDU
Fri Aug 22 10:16:20 PDT 2008
Writing refined structure to PDB file:
/Users/francisreyes/Desktop/No_Sync/RBD_MOSFLM_P4_processing/
cns_P41_solution_18/RBD_P4PROCESS_18.1_refine_001.pdb
n_use = 1586
n_use_u_iso = 1586
n_use_u_aniso = 0
n_grad_site = 0
n_grad_u_iso = 0
n_grad_u_aniso = 0
n_grad_occupancy = 0
n_grad_fp = 0
n_grad_fdp = 0
n_anisotropic_flag = 0
total number of scatterers = 1586
Traceback (most recent call last):
File "/usr/local/phenix-1.3-rc2/phenix/phenix/command_line/
refine.py", line 5, in <module>
command_line.run(command_name="phenix.refine", args=sys.argv[1:])
File "/usr/local/phenix-1.3-rc2/phenix/phenix/refinement/
command_line.py", line 99, in run
map_manger.write_files()
File "/usr/local/phenix-1.3-rc2/phenix/phenix/refinement/
driver.py", line 1170, in write_files
coeffs =
self.refine_object.fmodel.map_coefficients(map_type=map_type)
File "/usr/local/phenix-1.3-rc2/mmtbx/mmtbx/twinning/
twin_f_model.py", line 2205, in map_coefficients
result = result.customized_copy( data = result.data()*aniso_scale )
RuntimeError: scitbx array_family range error
Using version
-------------------------------------------------------------------------------
PHENIX: Python-based Hierarchical ENvironment for Integrated
Xtallography
Version: 1.3
Release tag: rc2
cctbx tag: 2008_05_25_1144
Platform: mac-ppc-osx osx-10.5.3
User: francisreyes
-------------------------------------------------------------------------------
Thanks
FR
---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder
gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
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