[phenixbb] phenix.refine writing maps error

Francis E Reyes Francis.Reyes at Colorado.EDU
Fri Aug 22 10:16:20 PDT 2008


Writing refined structure to PDB file:
   /Users/francisreyes/Desktop/No_Sync/RBD_MOSFLM_P4_processing/ 
cns_P41_solution_18/RBD_P4PROCESS_18.1_refine_001.pdb
n_use            =  1586
n_use_u_iso      =  1586
n_use_u_aniso    =  0
n_grad_site      =  0
n_grad_u_iso     =  0
n_grad_u_aniso   =  0
n_grad_occupancy =  0
n_grad_fp        =  0
n_grad_fdp       =  0
n_anisotropic_flag =  0
total number of scatterers =  1586

Traceback (most recent call last):
   File "/usr/local/phenix-1.3-rc2/phenix/phenix/command_line/ 
refine.py", line 5, in <module>
     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
   File "/usr/local/phenix-1.3-rc2/phenix/phenix/refinement/ 
command_line.py", line 99, in run
     map_manger.write_files()
   File "/usr/local/phenix-1.3-rc2/phenix/phenix/refinement/ 
driver.py", line 1170, in write_files
     coeffs =  
self.refine_object.fmodel.map_coefficients(map_type=map_type)
   File "/usr/local/phenix-1.3-rc2/mmtbx/mmtbx/twinning/ 
twin_f_model.py", line 2205, in map_coefficients
     result = result.customized_copy( data = result.data()*aniso_scale )
RuntimeError: scitbx array_family range error


Using version

-------------------------------------------------------------------------------
   PHENIX: Python-based Hierarchical ENvironment for Integrated  
Xtallography
   Version: 1.3
   Release tag: rc2
   cctbx tag: 2008_05_25_1144
   Platform: mac-ppc-osx osx-10.5.3
   User: francisreyes
-------------------------------------------------------------------------------


Thanks


FR


---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder

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