[phenixbb] phenix.refine error

Peter Zwart PHZwart at lbl.gov
Tue Sep 11 19:18:06 PDT 2007


That is something I found myself today and am working on that currently.

P

Jianghai Zhu wrote:
> Hi,
>
> I was trying the twinning refinement by phenix.refine and I got the 
> following error messages during TLS refinement.
>
> Traceback (most recent call last):
>   File 
> "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/command_line/refine.py", 
> line 5, in <module>
>     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>   File 
> "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/refinement/command_line.py", 
> line 81, in run
>     call_back_after_monitor_collect=call_back_after_monitor_collect)
>   File 
> "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/refinement/driver.py", 
> line 1244, in run
>     log                     = log)
>   File 
> "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/refinement/strategies.py", 
> line 866, in refinement_machine
>     h_params                  = h_params)
>   File 
> "/nfs/home/jzhu/cci_apps_sources/mmtbx/mmtbx/refinement/adp_refinement.py", 
> line 175, in __init__
>     macro_cycle = macro_cycle)
>   File "/nfs/home/jzhu/cci_apps_sources/mmtbx/mmtbx/tls/tools.py", 
> line 600, in __init__
>     fmodel.info().show_targets(text = prefix+" start model", out = out)
> AttributeError: 'info' object has no attribute 'show_targets'
>
> Could somebody help me?  Thanks.
>
> Jianghai
>
> PS.  the version is 2007_08_18_1856.
>
> +++++++++++++++++++++++++++++++
> Jianghai Zhu, Ph.D
> CBR Institute for Biomedical Research
> Department of Pathology
> Harvard Medical School
> 200 Longwood Ave., Boston, MA 02115
> Ph: 617-278-3211
> Fx: 618-278-3232
> +++++++++++++++++++++++++++++++
>
>
>
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>
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