[phenixbb] SAD related query

[tara kashav]

Dear all,
I am a novice user of phenix.  I am trying to obtain phases for SAD dataset
collected at 2.5 angs from autosol.But when i give the phases to autobuild,
the R-factor is not decreasing below 49%. Also, in warp, it is unable to
built with a message "encounterd an unknown element". Can someone suggest me
what could be the problem.

Thanks for any suggestion in advance.
Tara Kashav

On 9/3/07, phenixbb-request at phenix-online.org <
phenixbb-request at phenix-online.org> wrote:
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>    1. command-line Patterson maps (Bryan W. Lepore)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Sun, 2 Sep 2007 00:07:51 -0500 (CDT)
> From: "Bryan W. Lepore" <bryanlepore at mail.utexas.edu>
> Subject: [phenixbb] command-line Patterson maps
> To: phenixbb at phenix-online.org
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> Pine.LNX.4.64.0709020001190.16588 at cpe-70-116-17-26.austin.res.rr.com>
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>
> will phenix calculate Pattersons from trial sites or a reflection file on
> the command line?  i.e. something besides hacking what is already there.
>
> e.g. cns has predict_patterson.inp.  i can't seem to find a way to do it
> from the command line - such as `phenix.patterson --sg=94
> reflections.mtz`.  i saw phenix.maps but that looks like electron density
> only.
>
> -bryan
>
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> End of phenixbb Digest, Vol 22, Issue 1
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-- 
Tara Kashav,
Dr. S. Gourinath's Lab,
Lab No 430,
School of Life Sciences,
Jawaharlal Nehru University,
New Delhi - 110067
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