[phenixbb] phenix.refine python error !!

[Pavel Afonine]

Hi John,

looking at the output I see that this is a bug; sorry for this. It will 
be fixed for the next (pre-)release.

Pavel.


john kryst wrote:
> Hi all !!!
>
>                I have recently updated phenix version to 
> phenix-1.3b-rc3. After that when i run phenix.refine it runs properly. 
> But while writing the pdb file it is giving the following error.
>
> Traceback (most recent call last):
>   File 
> "/usr/local/phenix-1.3b-rc3/phenix/phenix/command_line/refine.py", 
> line 5, in <module>
>     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>   File "/usr/local/phenix- 
> 1.3b-rc3/phenix/phenix/refinement/command_line.py", line 89, in run
>     refine_object.write_refined_pdb(f_pdb)
>   File 
> "/usr/local/phenix-1.3b-rc3/phenix/phenix/refinement/driver.py", line 
> 1101, in write_refined_pdb
>     pdb_header.write_remark_3(info = m_info, out = f)
>   File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/pdb_header.py", line 
> 21, in write_remark_3
>     info.show_remark_3(out = out)
>   File "/usr/local/phenix- 1.3b-rc3/mmtbx/mmtbx/model_statistics.py", 
> line 483, in show_remark_3
>     self.data_x.show_remark_3(out = out)
>   File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/f_model.py", line 2034, 
> in show_remark_3
>     bin.n_work, bin.n_free, bin.r_work*100., bin.r_free*100.)
> TypeError: unsupported operand type(s) for *: 'NoneType' and 'float'
>
> I am using fedora 5, python 2.4.2. I have used 
> phenix-installer-1.3b-rc3-intel-linux-2.4.tar . It was working fine in 
> the last build. Google'ing the error didn't help much.
>
> Thanks for your inputs.
>
> regards
> John
> ------------------------------------------------------------------------
>
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