[phenixbb] [Spam] Re: NAG-ASN link

Jianghai Zhu jzhu at cbr.med.harvard.edu
Sun Oct 7 09:26:25 PDT 2007


There is a little problem here.  The ASN residues which are not  
glycosylation sites have both HD21 and HD22.  If I simply replace  
HD22 with HD21, those ASN residues will have two HD21 atoms. So it is  
more complicated than one line sed script.

Jianghai

+++++++++++++++++++++++++++++++
Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232
+++++++++++++++++++++++++++++++



On Oct 7, 2007, at 12:20 PM, Ralf W. Grosse-Kunstleve wrote:

> Thanks for reporting this problem!
> While we work on a fix, you can easily patch your PDB files like this:
>
>   sed 's/HD22 ASN/HD21 ASN/' good.pdb > better.pdb
>
> Ralf

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