[phenixbb] [Spam] Re: NAG-ASN link
Jianghai Zhu
jzhu at cbr.med.harvard.edu
Sun Oct 7 09:26:25 PDT 2007
There is a little problem here. The ASN residues which are not
glycosylation sites have both HD21 and HD22. If I simply replace
HD22 with HD21, those ASN residues will have two HD21 atoms. So it is
more complicated than one line sed script.
Jianghai
+++++++++++++++++++++++++++++++
Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232
+++++++++++++++++++++++++++++++
On Oct 7, 2007, at 12:20 PM, Ralf W. Grosse-Kunstleve wrote:
> Thanks for reporting this problem!
> While we work on a fix, you can easily patch your PDB files like this:
>
> sed 's/HD22 ASN/HD21 ASN/' good.pdb > better.pdb
>
> Ralf
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20071007/75bdf551/attachment-0003.htm>
More information about the phenixbb
mailing list