[phenixbb] ls_wunit_k1

Jianghai Zhu jzhu at cbr.med.harvard.edu
Sun Mar 25 20:14:17 PDT 2007


All right.  The target for my TLS is also LS.  Is that intentional too?

Jianghai

+++++++++++++++++++++++++++++++
Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232
+++++++++++++++++++++++++++++++



On Mar 25, 2007, at 10:55 PM, Petrus H Zwart wrote:

> Yes.
>
> It is more robust and used in the so called MZ protocol. It has a  
> large radius of convergence.
>
> Peter
>
>
>
> ----- Original Message -----
> From: Jianghai Zhu <jzhu at cbr.med.harvard.edu>
> Date: Sunday, March 25, 2007 6:25 pm
> Subject: Re: [phenixbb] ls_wunit_k1
> To: PHENIX user mailing list <phenixbb at phenix-online.org>
>
> > The default target for rigid body is LS from "phenix.refine --show-
> >
> > defaults=all".  Is this intentional?
> >
> > Jianghai
> >
> > +++++++++++++++++++++++++++++++
> > Jianghai Zhu, Ph.D
> > CBR Institute for Biomedical Research
> > Department of Pathology
> > Harvard Medical School
> > 200 Longwood Ave., Boston, MA 02115
> > Ph: 617-278-3211
> > Fx: 618-278-3232
> > +++++++++++++++++++++++++++++++
> >
> >
> >
> > On Mar 25, 2007, at 10:14 PM, Jianghai Zhu wrote:
> >
> > > I checked my log file and didn't find "automatic adjustment".
> > My
> > > main target is mlhl.  However, the target function for rigid
> > body
> > > is ls_wunit_k1.  I didn't choose that.  Is LS the default for
> > rigid
> > > body?
> > >
> > > Jianghai
> > >
> > > +++++++++++++++++++++++++++++++
> > > Jianghai Zhu, Ph.D
> > > CBR Institute for Biomedical Research
> > > Department of Pathology
> > > Harvard Medical School
> > > 200 Longwood Ave., Boston, MA 02115
> > > Ph: 617-278-3211
> > > Fx: 618-278-3232
> > > +++++++++++++++++++++++++++++++
> > >
> > >
> > >
> > > On Mar 25, 2007, at 10:00 PM, Ralf W. Grosse-Kunstleve wrote:
> > >
> > >>> You are right.  Somehow, the default target function in
> > >>> refinement.bulk_solvent_and_scale is LS, not ML.
> > >>
> > >> The default (phenix.refine --show-defaults=all) is actually ml.
> > >> However, if the main target is set to ls the  
> bulk_solvent_and_scale
> > >> target is automatically reset to ls, too. There should be
> > >> corresponding
> > >> messages in the log file ("automatic adjustment").
> > >> Ralf
> > >> _______________________________________________
> > >> phenixbb mailing list
> > >> phenixbb at phenix-online.org
> > >> http://www.phenix-online.org/mailman/listinfo/phenixbb
> > >
> > > _______________________________________________
> > > phenixbb mailing list
> > > phenixbb at phenix-online.org
> > > http://www.phenix-online.org/mailman/listinfo/phenixbb
> >
> >
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20070325/7b783056/attachment-0004.htm>


More information about the phenixbb mailing list