jzhu at cbr.med.harvard.edu
Sun Mar 25 19:25:11 PDT 2007
The default target for rigid body is LS from "phenix.refine --show-
defaults=all". Is this intentional?
Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
On Mar 25, 2007, at 10:14 PM, Jianghai Zhu wrote:
> I checked my log file and didn't find "automatic adjustment". My
> main target is mlhl. However, the target function for rigid body
> is ls_wunit_k1. I didn't choose that. Is LS the default for rigid
> Jianghai Zhu, Ph.D
> CBR Institute for Biomedical Research
> Department of Pathology
> Harvard Medical School
> 200 Longwood Ave., Boston, MA 02115
> Ph: 617-278-3211
> Fx: 618-278-3232
> On Mar 25, 2007, at 10:00 PM, Ralf W. Grosse-Kunstleve wrote:
>>> You are right. Somehow, the default target function in
>>> refinement.bulk_solvent_and_scale is LS, not ML.
>> The default (phenix.refine --show-defaults=all) is actually ml.
>> However, if the main target is set to ls the bulk_solvent_and_scale
>> target is automatically reset to ls, too. There should be
>> messages in the log file ("automatic adjustment").
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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> phenixbb at phenix-online.org
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