[phenixbb] Forcing autobuild wizard to do a complete rebuild

[Tom Terwilliger]

Hi Carsten,

Yes, I see this is unclear.

All commands listed at the end of the documentation for each wizard 
can be applied at the command line. (Not just the ones labelled 
command-line only).

All the best,
Tom T

At 11:15 AM 12/3/2007, you wrote:
>Thanks Tom, Peter
>
>As a follow-up question, which may have been addressed in the 
>manual, but I don't recall seeing it: Does the (wizard) command line 
>accept ALL keywords under the autobuild/autosol scope or ONLY the 
>ones listed as "command-line-only"? I assumed (wrongfully?) that the 
>command line only accepts the keywords explicitely listed under 
>"command-line-only", and the rest is reserved for scripts/input files.
>
>I know, I could test this out, but a general clarification by the 
>experts and an addition to the manual, if necessary, would be great.
>
>Cheers,
>
>         Carsten
>
>
>
> > -----Original Message-----
> > From: phenixbb-bounces at phenix-online.org
> > [mailto:phenixbb-bounces at phenix-online.org]On Behalf Of Tom
> > Terwilliger
> > Sent: Monday, December 03, 2007 12:59 PM
> > To: PHENIX user mailing list
> > Subject: Re: [phenixbb] Forcing autobuild wizard to do a complete
> > rebuild
> >
> >
> > Hi Carsten,
> >
> > You can tell the autobuild wizard from the command line:
> >
> > rebuild_in_place=False
> >
> > You can also set this in the GUI on the 2nd input screen at the top
> > of the screen.
> >
> > I hope that helps!
> > -Tom T
> >
> > At 10:17 AM 12/3/2007, you wrote:
> > >Content-class: urn:content-classes:message
> > >Content-Type: multipart/alternative;
> > >         boundary="----_=_NextPart_001_01C835D0.68A40BB9"
> > >
> > >Hi,
> > >
> > >I am using the autobuild wizard in the latest phenix release to
> > >rebuild a model from a MR solution.  Since the MR-template I used
> > >has been modified with chainsaw, its sequence identity to the target
> > >sequence is fairly high. The autobuild wizard therefore uses the
> > >rebuilt-in-place mode to rebuild the model. How can I force the
> > >wizard to do a complete rebuild?
> > >
> > >Thanks
> > >
> > >         Carsten
> > >_______________________________________________
> > >phenixbb mailing list
> > >phenixbb at phenix-online.org
> > >http://www.phenix-online.org/mailman/listinfo/phenixbb
> >
> >
> >
> >
> > Thomas C. Terwilliger
> > Mail Stop M888
> > Los Alamos National Laboratory
> > Los Alamos, NM 87545
> >
> > Tel:  505-667-0072                 email: terwilliger at LANL.gov
> > Fax: 505-665-3024                 SOLVE web site:
>http://solve.lanl.gov
>PHENIX web site: http:www.phenix-online.org
>ISFI Integrated Center for Structure and Function Innovation web
>site: http://techcenter.mbi.ucla.edu
>TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
>
>
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>
>
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web 
site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB