[phenixbb] PHENIX user mailing list <phenixbb at phenix-online.org>

Ralf W. Grosse-Kunstleve rwgk at cci.lbl.gov
Sun Apr 15 21:44:10 PDT 2007


Hi James,

> Number of atoms with unknown nonbonded energy type symbols: 14
>     "CD    CD D   1 "
>     "CD    CD D   2 "

This problem should be fixed in the latest phenix development release
(1.26 beta @ http://www.phenix-online.org/download/index.html) and
the slightly more recent CCI Apps (link at same web page).
Are you using phenix.refine from an older release? Could you please
try the latest phenix or CCI Apps?

Ralf



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