[phenixbb] a few questions

[Jianghai Zhu]

Hi All,

I have a few questions about phenix.refine and I couldn't find the  
answer in the manual.

1)  How to generate the ligand library in phenix.refine?

2) Can phenix.refine calculate an OMIT COMPOSITE map?

3) When I used ML as the target, I couldn't find the output of LLG or  
similar number in the log file.  How do I know the refinement is  
converged?

Thanks.

Jianghai

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Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232
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