[phenixbb] Autobuild peptide?

ckielkop ckielkop at jhsph.edu
Thu Mar 9 13:31:41 PST 2006


Hi,
We have a molecular replacement RNA structure with a bound peptide. I'd like
phenix autobuild the peptide, because only a portion of it is bound and we'd
like an unbiased, silicon opinion about what that portion is.

 It's not clear to me how to proceed with this in phenix- we have a
beautiful electron density map from CNS, coordinates for the RNA portion,
and peptide sequence.

Thanks for any guidance!

-- 
Clara L. Kielkopf
Assistant Professor
Biochemistry and Molecular Biology
Johns Hopkins University
Rm. W8708 BSPH
615 N. Wolfe St.
Baltimore, MD 21205
Ph. 443-287-4546



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