[phenixbb] Problems in installation Phenix1.1a on Linux redhat F4

Erik Mckee emckee at cs.tamu.edu
Fri Jan 6 19:42:20 PST 2006


chcon -c -v -R -u system_u -r object_r -t lib_t
/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/

will probably do the trick.  Look up SELinux for more information at
http://www.nsa.gov/selinux/info/faq.cfm

hope this helps :)
Erik

On Fri, 6 Jan 2006, Cheng Luo, Ph.D. wrote:

> Dear Phenix users,
>
> I am a new user of phenix. When I install it in a new machine installed Linux F4, I meet a problem in gtk. I paste the information( the reported err is in red words).
>
> "
> generating PHENIX environment setup script
>
> creating /marmor9/pub/bin/phenix-1.1a/phenix_env
>
> generating libtbx environment additions
>
> creating $PHENIX_BUILD/dispatcher_include_phenix.sh
>
> setting environment
>
> configuring PHENIX components
>
> /marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/bin/gtk-query-immodules-2.0: error while loading shared libraries: /marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/libgdk-x11-2.0.so.0: cannot restore segment prot after reloc: Permission denied
> generating gdk-pixbuf.loaders file"
>
> .....other is ok
>
> After installation, i source the env and run with phenix command, it told me these errors:
>   File "/marmor9/pub/bin/phenix-1.1a/phenix/wxGUI/wxPhenix.py", line 11, in ?
>     from wxPython.wx import *
>   File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wxPython/__init__.py", line 10, in ?
>     import _wx
>   File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wxPython/_wx.py", line 3, in ?
>     from _core import *
>   File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wxPython/_core.py", line 15, in ?
>     import wx._core
>   File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wx/__init__.py", line 42, in ?
>     from wx._core import *
>   File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wx/_core.py", line 4, in ?
>     import _core_
> ImportError: /marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/libgdk-x11-2.0.so.0: cannot restore segment prot after reloc: Permission denied
>
> Then I share this disk and source and run in another machine install red-hat 9, it did work. So maybe some library configurations are different, but since I have no too much experience about it. Is it possible for your expert give me some suggestion?
>
> Thank you in advance for your any suggestions!
>
> Best regards,
>
>
> Cheng Luo, Ph.D.
>
>
>
>
> Cheng Luo, Ph.D.
> Marmorstein's Lab              Room 327,3601 Spruce StreetThe Wistar Institute   PA(19104) USA                    Tel:215-898-2304
> 2006-01-06
>



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