The Basics (Essential reading)

The PHENIX Environment

Graphical User Interface Tour sequence

GUI Demonstration sequence

The PHENIX Graphical User Interface

Quick Start with PHENIX Wizards

Running Wizards at the command line

Substructure Determination (HySS)

Structure Refinement (phenix.refine)

electron Ligand Builder and Optimiser Workbench (eLBOW)

Xray data checks (mmtbx.xtriage)

Explore metric symmetry (iotbx.explore_metric_symmetry)

PHASER Help

SOLVE/RESOLVE Help

TEXTAL Help

FAQ

Glossary